So for i17, I decided to go through and do a fresh settitle bind runthrough for my 2 main badge characters to make sure they were synced with CIT before I started on the new exploration badges. I noticed my villain, Aurora Nightshade, showed 424 verified on the website whereas ingame she had 427.
I first used the settitle binds off of the Badge-Hunter website. I made a run through my villain and my badge count showed 427 on the Badge-Hunter website, however it still showed only 424 on the CIT website. So I used the CIT bind generator, thinking maybe something is different in the bind verification files, and did another run through. Still 424. So I examined the badge list by hand hoping to figure out which ones were missing. I got lucky and saw that Terror wasn't registering. A quick scan showed that Terror, Monstrous, and Hell and Back were not registering. I clicked them all by hand but they still did not register on CIT.
I then decided to download Glycerine. After clicking the badges by hand with Glycerine, I was finally able to get the badge counts to sync properly and those 3 badges to detect.
I had this error in the HS logfile:
2010-05-03 21:39:41,072 [3] ERROR WebIntegration.TitanUpdateWebRequest - Failure when making WebRequest to the Titan Network sites: System.IndexOutOfRangeException: Index was outside the bounds of the array.
I don't have any other characters with the badges to test out of this is a problem on other characters. My blueside character already had them registered on the site from before, so I can't doublecheck with her.