I just finished changing my Rogue to Hero. I noticed the profile lacking a custom image still showed the arachnos spider, so I manually changed him to hero and saved the changes. I tried updating CIT to display his new hero title "The Ultimate", and it wasn't an option because the available titles were still villain. It's a Dominator, so I guess CIT can't allow opposite titles yet?
The Titles are most likely accounting for the AT rather than the alignment. You can expect this to be changed in the next site publish.